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b/test/resources/sshTool.t2flow |
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<workflow xmlns="http://taverna.sf.net/2008/xml/t2flow" version="1" producedBy="taverna-2.4.0"><dataflow id="93971f50-9f59-4f71-adc7-f08f5a5eb53a" role="top"><name>Workflow1</name><inputPorts><port><name>input</name><depth>0</depth><granularDepth>0</granularDepth><annotations /></port></inputPorts><outputPorts><port><name>output</name><annotations /></port></outputPorts><processors><processor><name>Tool</name><inputPorts><port><name>in1</name><depth>0</depth></port></inputPorts><outputPorts><port><name>STDOUT</name><depth>0</depth><granularDepth>0</granularDepth></port></outputPorts><annotations /><activities><activity><raven><group>net.sf.taverna.t2.activities</group><artifact>external-tool-activity</artifact><version>1.4</version></raven><class>net.sf.taverna.t2.activities.externaltool.ExternalToolActivity</class><inputMap><map from="in1" to="in1" /></inputMap><outputMap><map from="STDOUT" to="STDOUT" /></outputMap><configBean encoding="xstream"><net.sf.taverna.t2.activities.externaltool.ExternalToolActivityConfigurationBean xmlns="">
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<mechanismType>D0A4CDEB-DD10-4A8E-A49C-8871003083D8</mechanismType>
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<mechanismName>fuel</mechanismName>
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<mechanismXML><?xml version="1.0" encoding="UTF-8"?>
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<sshInvocation><sshNode><host>fue.onb.ac.at</host><port>22</port><directory>/tmp/</directory><linkCommand>/bin/ln -s %%PATH_TO_ORIGINAL%% %%TARGET_NAME%%</linkCommand><copyCommand>/bin/cp %%PATH_TO_ORIGINAL%% %%TARGET_NAME%%</copyCommand></sshNode></sshInvocation>
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</mechanismXML>
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<externaltoolid>e1195d09-0d9c-4e19-9971-490f6a9f8984</externaltoolid>
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<useCaseDescription>
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<usecaseid />
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<description />
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<command>C:\Users\munterberger\workspace\TavernaExtractor\test\resources\tool.bat %%in1%%</command>
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<preparingTimeoutInSeconds>1200</preparingTimeoutInSeconds>
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<executionTimeoutInSeconds>1800</executionTimeoutInSeconds>
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<tags>
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<string>in1</string>
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</tags>
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<REs />
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<queue__preferred />
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<queue__deny />
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<static__inputs />
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<inputs>
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<entry>
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<string>in1</string>
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<de.uni__luebeck.inb.knowarc.usecases.ScriptInputUser>
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<tag>in1</tag>
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<file>false</file>
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<tempFile>false</tempFile>
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<binary>false</binary>
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<charsetName>windows-1252</charsetName>
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<forceCopy>false</forceCopy>
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<list>false</list>
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<concatenate>false</concatenate>
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<mime />
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</de.uni__luebeck.inb.knowarc.usecases.ScriptInputUser>
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</entry>
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</inputs>
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<outputs />
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<includeStdIn>false</includeStdIn>
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<includeStdOut>true</includeStdOut>
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<includeStdErr>true</includeStdErr>
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<validReturnCodes>
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<int>0</int>
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</validReturnCodes>
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</useCaseDescription>
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<edited>false</edited>
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</net.sf.taverna.t2.activities.externaltool.ExternalToolActivityConfigurationBean></configBean><annotations /></activity></activities><dispatchStack><dispatchLayer><raven><group>net.sf.taverna.t2.core</group><artifact>workflowmodel-impl</artifact><version>1.4</version></raven><class>net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize</class><configBean encoding="xstream"><net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ParallelizeConfig xmlns="">
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<maxJobs>1</maxJobs>
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</net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ParallelizeConfig></configBean></dispatchLayer><dispatchLayer><raven><group>net.sf.taverna.t2.core</group><artifact>workflowmodel-impl</artifact><version>1.4</version></raven><class>net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBounce</class><configBean encoding="xstream"><null xmlns="" /></configBean></dispatchLayer><dispatchLayer><raven><group>net.sf.taverna.t2.core</group><artifact>workflowmodel-impl</artifact><version>1.4</version></raven><class>net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failover</class><configBean encoding="xstream"><null xmlns="" /></configBean></dispatchLayer><dispatchLayer><raven><group>net.sf.taverna.t2.core</group><artifact>workflowmodel-impl</artifact><version>1.4</version></raven><class>net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry</class><configBean encoding="xstream"><net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.RetryConfig xmlns="">
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<backoffFactor>1.0</backoffFactor>
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<initialDelay>1000</initialDelay>
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<maxDelay>5000</maxDelay>
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<maxRetries>0</maxRetries>
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</net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.RetryConfig></configBean></dispatchLayer><dispatchLayer><raven><group>net.sf.taverna.t2.core</group><artifact>workflowmodel-impl</artifact><version>1.4</version></raven><class>net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invoke</class><configBean encoding="xstream"><null xmlns="" /></configBean></dispatchLayer></dispatchStack><iterationStrategyStack><iteration><strategy><cross><port name="in1" depth="0" /></cross></strategy></iteration></iterationStrategyStack></processor></processors><conditions /><datalinks><datalink><sink type="processor"><processor>Tool</processor><port>in1</port></sink><source type="dataflow"><port>input</port></source></datalink><datalink><sink type="dataflow"><port>output</port></sink><source type="processor"><processor>Tool</processor><port>STDOUT</port></source></datalink></datalinks><annotations><annotation_chain_2_2 encoding="xstream"><net.sf.taverna.t2.annotation.AnnotationChainImpl xmlns="">
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<annotationAssertions>
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<net.sf.taverna.t2.annotation.AnnotationAssertionImpl>
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<annotationBean class="net.sf.taverna.t2.annotation.annotationbeans.IdentificationAssertion">
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<identification>93971f50-9f59-4f71-adc7-f08f5a5eb53a</identification>
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</annotationBean>
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<date>2014-01-23 12:01:02.140 UTC</date>
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<creators />
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<curationEventList />
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</net.sf.taverna.t2.annotation.AnnotationAssertionImpl>
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</annotationAssertions>
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</net.sf.taverna.t2.annotation.AnnotationChainImpl></annotation_chain_2_2><annotation_chain_2_2 encoding="xstream"><net.sf.taverna.t2.annotation.AnnotationChainImpl xmlns="">
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<annotationAssertions>
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<net.sf.taverna.t2.annotation.AnnotationAssertionImpl>
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67 |
<annotationBean class="net.sf.taverna.t2.annotation.annotationbeans.IdentificationAssertion">
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<identification>97fd16b3-d09d-470b-bf2c-e7067aa37512</identification>
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</annotationBean>
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<date>2014-01-23 09:10:39.610 UTC</date>
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<creators />
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<curationEventList />
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</net.sf.taverna.t2.annotation.AnnotationAssertionImpl>
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</annotationAssertions>
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</net.sf.taverna.t2.annotation.AnnotationChainImpl></annotation_chain_2_2><annotation_chain_2_2 encoding="xstream"><net.sf.taverna.t2.annotation.AnnotationChainImpl xmlns="">
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<annotationAssertions>
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77 |
<net.sf.taverna.t2.annotation.AnnotationAssertionImpl>
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<annotationBean class="net.sf.taverna.t2.annotation.annotationbeans.IdentificationAssertion">
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<identification>39d27bf9-8e12-4e65-b37e-f08df2c0f328</identification>
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</annotationBean>
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81 |
<date>2014-01-23 09:37:59.465 UTC</date>
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<creators />
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83 |
<curationEventList />
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</net.sf.taverna.t2.annotation.AnnotationAssertionImpl>
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</annotationAssertions>
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86 |
</net.sf.taverna.t2.annotation.AnnotationChainImpl></annotation_chain_2_2><annotation_chain_2_2 encoding="xstream"><net.sf.taverna.t2.annotation.AnnotationChainImpl xmlns="">
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<annotationAssertions>
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88 |
<net.sf.taverna.t2.annotation.AnnotationAssertionImpl>
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<annotationBean class="net.sf.taverna.t2.annotation.annotationbeans.IdentificationAssertion">
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<identification>ccea8ae7-8f22-4467-960b-f4acae5252f8</identification>
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</annotationBean>
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<date>2014-01-23 09:48:54.544 UTC</date>
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<creators />
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<curationEventList />
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</net.sf.taverna.t2.annotation.AnnotationAssertionImpl>
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</annotationAssertions>
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</net.sf.taverna.t2.annotation.AnnotationChainImpl></annotation_chain_2_2><annotation_chain_2_2 encoding="xstream"><net.sf.taverna.t2.annotation.AnnotationChainImpl xmlns="">
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98 |
<annotationAssertions>
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99 |
<net.sf.taverna.t2.annotation.AnnotationAssertionImpl>
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100 |
<annotationBean class="net.sf.taverna.t2.annotation.annotationbeans.IdentificationAssertion">
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<identification>22849d21-1657-4e98-bf0c-ce332554f8c5</identification>
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</annotationBean>
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103 |
<date>2014-01-23 09:47:51.845 UTC</date>
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<creators />
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<curationEventList />
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</net.sf.taverna.t2.annotation.AnnotationAssertionImpl>
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</annotationAssertions>
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</net.sf.taverna.t2.annotation.AnnotationChainImpl></annotation_chain_2_2></annotations></dataflow></workflow> |