Open Source Projects Europe

--- a/src/main/java/converter/OwlTest.java
+++ b/src/main/java/converter/OwlManager.java
@@ -4,7 +4,6 @@
 import org.semanticweb.owlapi.apibinding.OWLManager;
 import org.semanticweb.owlapi.model.*;
 
-import java.io.File;
 import java.util.ArrayList;
 import java.util.HashMap;
 import java.util.HashSet;
@@ -12,14 +11,12 @@
 /**
  * Created by miguel on 02-05-2014.
  */
-public class OwlTest {
-
-    private OWLManager managerManager;
-    private OWLOntologyManager manager;
+public class OwlManager {
+
     private OWLOntology mainOntology;
 
 
-    public OwlTest(String ontologyPath) {
+    public OwlManager(String ontologyPath) {
         OWLManager managerManager = new OWLManager();
         OWLOntologyManager manager = managerManager.buildOWLOntologyManager();
         try {
@@ -34,21 +31,13 @@
 
         for (OWLEntity claz : mainOntology.getClassesInSignature()) {
             if (claz.isOWLClass() && getIndividualNameFromURI(claz.getIRI().toString()).equals(className)) {
-//                System.out.println(claz.getIRI());
                 for (OWLIndividual ind : claz.asOWLClass().getIndividuals(mainOntology)) {
-//                    ind.asOWLNamedIndividual().
                     Object[] anot = ind.asOWLNamedIndividual().getAnnotations(mainOntology).toArray();
                     if (anot != null && anot.length > 0 && ((OWLAnnotation) anot[0]).getValue() != null && ((OWLAnnotation) anot[0]).getValue().toString() != "")
                         individuals.put(getIndividualNameFromURI(ind.toString()), getNameFromLabel(((OWLAnnotation) anot[0]).getValue().toString()));
                     else
                         individuals.put(getIndividualNameFromURI(ind.toString()), getIndividualNameFromURI(ind.toString()));
-//                    System.out.println(anot.getValue().toString());
-                    /*for (OWLObjectPropertyExpression ope : ind.getObjectPropertyValues(mainOntology).keySet())
-                        System.out.println("\t" + ope.toString() + " --> " + ind.getObjectPropertyValues(mainOntology).get(ope).toArray()[0].toString());
-*/
-                }
-                /*OWLIndividual ind = (OWLIndividual) .toArray()[0];
-                System.out.println(ind.getTypes(ontology));*/
+                }
                 break;
             }
         }
@@ -94,9 +83,7 @@
     }
 
     public ArrayList<String> getElementWithNumberOfInFlows(int number, boolean greaterThan) {
-        /*if (number == 0)
-            throw new IllegalArgumentException("Zero is not a valid number. Required: number>=1");
-       */ ArrayList<String> list = new ArrayList<String>();
+         ArrayList<String> list = new ArrayList<String>();
         ArrayList<StringPair> flows = getFlows();
         for (StringPair s : flows) {
             int i = 0;
@@ -127,7 +114,6 @@
 
         for (OWLEntity claz : mainOntology.getClassesInSignature()) {
             if (claz.isOWLClass()) {
-//                System.out.println(claz.getIRI());
                 for (OWLIndividual ind : claz.asOWLClass().getIndividuals(mainOntology)) {
                     for (OWLObjectPropertyExpression ope : ind.getObjectPropertyValues(mainOntology).keySet()) {
                         if (getIndividualNameFromURI(ope.toString()).equals("flowTo") || getIndividualNameFromURI(ope.toString()).equals("triggers")) {
@@ -137,8 +123,6 @@
                         }
                     }
                 }
-                /*OWLIndividual ind = (OWLIndividual) .toArray()[0];
-                System.out.println(ind.getTypes(ontology));*/
             }
         }
         return flows;
@@ -200,7 +184,7 @@
         OWLManager managerManager = new OWLManager();
         OWLOntologyManager manager = managerManager.buildOWLOntologyManager();
 
-        OwlTest test = new OwlTest("/home/miguel/Dropbox/CMS-shared-TIMBUS/development/converter-dio-bpmn/wp9-2/drugfusion.owl");
+        OwlManager test = new OwlManager("/home/miguel/Dropbox/CMS-shared-TIMBUS/development/converter-dio-bpmn/wp9-2/drugfusion.owl");
 
         /*System.out.println(test.getNameAnnotationFromId("c892b3d1"));
         ArrayList<StringPair> flows = test.getFlows();