The easiest way to set up a fuseki repository with a sparql endpoint is to simply check out:
http://opensourceprojects.eu/p/timbus/context-model/repo/
and e.g. call "make USECASE=WP9 all"
It will pull fuseki and jena for you and instatiate a full WP9 Scenario on port 3030.
call "make stop" to stop it again...
The graph names are the URLs of the source ontologies from http://timbus.teco.edu/ontologies.
The Makefile ensures that all dependent ontologies are loaded.
The full graph with all files is available as default graph.